The Ralph Beckett-trained Cubanita collared Sajjhaa in the dying strides to claim the Betfred EBF Gillies Fillies' Stakes at Doncaster.
Dropping from Group One to Listed level, Godolphin's highly-rated Sajjhaa was sent off the 7-4 favourite and looked to have sealed it when Mickael Barzalona swept to the front approaching the two-furlong pole.
But her stride was shortening just as Cubanita's abundant stamina was kicking in entering the distance, and Jim Crowley's mount (8-1) was half a length to the good as they flashed past the line.
The lightly-raced maiden winner Reckoning ran on encouragingly to fill the places under champion jockey Richard Hughes.
Crowley said: "It's been stop-start with her this season so hopefully she'll stay in training next year, fingers crossed. I got a good trip round. They went a good gallop and everything went well in the end. I think she'll get a mile and a half. The last furlong was her best furlong."
Godolphin clinched the owners' championship with a double through Mar Mar and Muharrib, both trained by Saeed bin Suroor.
Mar Mar (7-2) showed a neat turn of foot two furlongs out to easily win the Betfred Cock O'The North EBF Maiden Stakes by four lengths under William Buick.
"She's a very honest filly, but she was a bit unsettled and keen last time, so we thought visors would help. She'll be a nice seven-furlong filly for next year," said Godolphin's representative Diana Cooper.
Muharrib (5-1) led over a furlong out under Barzalona to defy top weight in the Betfred 'The Home Of Goals Galore' Nursery.
Cooper said: "He's a very bonny horse who has thrived all season. He'll have a nice holiday now and he's one to look forward to. He's very honest and game and gives his all every time."
1 September 2014Maguire hails 'fantastic' Peddlers
Balding staying grounded with Park
Culloty joins Leger Legends
McCain salutes retiring Peddlers
Regard among September possibles
Cox takes Haydock plunge with Love
Seven Towcester meetings go to ARC
Paddy gunning for Chepstow
Athenian has sales date
No hurry for Cape call
Further checks for Condon
Mirza on Abbaye trail
Due set to miss Sprint date
Condon 'stable' after Cork fall
Queen rules supreme for Smith
River eases to debut success
Carla tops it up to four
Atzeni strikes on Cappella
Ocean team want Haydock rain
Big time beckons for Orange
Palmer aims high with Aktabantay
Hills ponders Dutch gameplan
31 August 2014Atzeni strikes on Cappella
Imminent return Likely
Logic on comeback trail
Dan edges closer to Mile high
Keane error costly for Unrequited
Notarfbad makes all in Mildmay
Orange enjoys Big win
Fabre strikes with Fintry
Akta in late Solario swoop
Icon takes starring role
Pearl fires home in Bullet
Shortall suffers injury setback
Tent team consider chasing
30 August 2014Keane error costly for Unrequited
Shepherd's sent to Tower
Time will tell for Charlton
Stack filly Alive to chance
Sansevero sent to Tower
Palmer plots Solario success
Fabre has high hopes for Fintry
Belardo team keen on Champagne
Rigueur targets Chester consolation
Native in hunt for Bullet gains
Arc still target for Taghrooda
29 August 2014Catterick on track for AW start
Twiston-Davies extends Aintree role
NTF launch Newcastle petition
Bangor launches schooling raceday
Glance sights turn to Australia
Elm to swerve Solario
Irish Leger an option for Seismos
Muir outlines Point plans
Maarek team mull sprint options
Eagle in Champion frame
Raydara plan undecided
Gosden raises Kingman trip question